Refined Notes on Igor Pro for MOI Data Analysis

1) Calibration

• Loadback() --- image type defaulted to be tif
  
• Loadimagesfreq(".tiff")
  
• Backcorrimages("data", blacklevel) --- blacklevel set to 0; This process may take 5 to 10 minues.
  

  Open the text file to copy the Bfield values into wave Bfiled.
  

• Make/N=70/D Bfield
  
• Duplicate '1kHz_00mT' ROI
  

  Open the hightest magnet field image to choose a region that is far away from the sample and unsaturated.
  

• ROI = 1
  
• ROI [489,1111][0,20] = 0
  
• ROI [489,1111][1003,1023] = 0
  

  Move ROI wave to 'root', and set 'root' to current data folder.
  

• Duplicate Bfield Intensity
  
• getROIIntensity("data", Intensity, ROI) --- wave intensity may be out of order. Change the order manually.
  

  Plot B-I curve --- window => new graph => Y Bfield X intensity
  

  Curve Fitting --- Analysis -->> curve fitting -->> use function [Bcalibration] check (from target)
  

  Ydata -- Bfield Xdata--- intensity
  

• Setcalparams(187.53,2.0336,0.010054,342.23,14.178) to store all the calibration parameters into root:calparams
  
• GeneratecalCurve(187.53,2.0336,0.010054,342.23,14.178)
  
• Newdatafolder invisible --- to create a new folder
  

  plot the calibrationcurve in our fitting curve
  

  active fitting curve window, go graph -> append traces to graph and adjust axis range and there we go
  

==== Calibration Finished ====

 

2) Profiles

• Loadimagesfreq(".tiff")
  
• Lineprofiles("data", 50, 1100) --- 1100 is the width in pixels
  
• Calspatial(147, 724, 1024) --- 724 is the width
  
• Calprofiles("data_pr")
  
• Shiftprofiles("data_pr_ca", -3.55)
  
• Cutprofilesbottomcenter("data_pr_ca", 435, 620, 20, 13.704)
  
• SmoothProfilesCenter("data_pr_ca", 158, 228, 10)
  
• Genintegralmatrices(root:calparams:xwave, 0)
  
• Calccurrentprofiles("data_pr_ca", root:inversekernel, 12) --- 12 is the applied Bfield.